Abundance and Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of Lake Constance (Germany)


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Ingeborg.Bussmann [ at ] awi.de

Abstract

<jats:title>ABSTRACT</jats:title> <jats:p> The abundances and activities of aerobic methane-oxidizing bacteria (MOB) were compared in depth profiles of littoral and profundal sediments of Lake Constance, Germany. Abundances were determined by quantitative PCR (qPCR) targeting the <jats:italic>pmoA</jats:italic> gene and by fluorescence in situ hybridization (FISH), and data were compared to methane oxidation rates calculated from high-resolution concentration profiles. qPCR using type I MOB-specific <jats:italic>pmoA</jats:italic> primers indicated that type I MOB represented a major proportion in both sediments at all depths. FISH indicated that in both sediments, type I MOB outnumbered type II MOB at least fourfold. Results obtained with both techniques indicated that in the littoral sediment, the highest numbers of methanotrophs were found at a depth of 2 to 3 cm, corresponding to the zone of highest methane oxidation activity, although no oxygen could be detected in this zone. In the profundal sediment, highest methane oxidation activities were found at a depth of 1 to 2 cm, while MOB abundance decreased gradually with sediment depth. In both sediments, MOB were also present at high numbers in deeper sediment layers where no methane oxidation activity could be observed. </jats:p>



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Eprint ID
19773
DOI https://www.doi.org/10.1128/aem.01350-08

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Rahalkar, M. , Deutzmann, J. , Schink, B. and Bussmann, I. (2009): Abundance and Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of Lake Constance (Germany) , Applied and Environmental Microbiology, 75 (1), pp. 119-126 . doi: https://www.doi.org/10.1128/aem.01350-08


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