Using the ICDP (International Continental Scientific Drilling Program) deep lake drilling expedition no. 5022 as an example, we describe core processing and sampling procedures as well as new tools developed for subsampling. A manual core splitter is presented that is (1) mobile, (2) able to cut plastic core liners lengthwise without producing swarf of liner material and (3) consists of off-the-shelf components. In order to improve the sampling of sediment cores, a new device, the core sampling assembly (CSA), was developed that meets the following targets: (1) the partitioning of the sediment into discs of equal thickness is fast and precise, (2) disturbed sediment at the inner surface of the liner is discarded during this sampling process, (3) usage of the available sediment is optimised, (4) subsamples are volumetric and oriented, and (5) identical subsamples are taken. The CSA can be applied to D-shaped split sediment cores of any diameter and consists of a divider and a D-shaped scoop. The sampling plan applied for ICDP expedition 5022 is illustrated and may be used as a guideline for planning the efficient partitioning of sediment amongst different lake research groups involved in multidisciplinary projects. For every subsample, the use of quality flags is suggested (1) to document the sample condition, (2) to give a first sediment classification and (3) to guarantee a precise adjustment of logging and scanning data with data determined on individual samples. Based on this, we propose a protocol that might be applied across lake drilling projects in order to facilitate planning and documentation of sampling campaigns and to ensure a better comparability of results. © 2011 Elsevier B.V.