The Amundsen Sea Embayment (ASE), with Pine Island Bay (PIB) in the eastern embayment, is a key location to understanding tectonic processes of the Pacific margin of West Antarctica. PIB has for a long time been suggested to contain the crustal boundary between the Thurston Island block and the Marie Byrd Land block. Plate tectonic reconstructions have shown that the initial rifting and breakup of New Zealand from West Antarctica occurred between Chatham Rise and the eastern Marie Byrd Land at the ASE. Recent concepts have discussed the possibility of PIB being the site of one of the eastern branches of the West Antarctic Rift System (WARS). About 30,000. km of aeromagnetic data - collected opportunistically by ship-based helicopter flights - and tracks of ship-borne magnetics were recorded over the ASE shelf during two RV Polarstern expeditions in 2006 and 2010. Grid processing, Euler deconvolution and 2D modelling were applied for the analysis of magnetic anomaly patterns, identification of structural lineaments and characterisation of magnetic source bodies. The grid clearly outlines the boundary zone between the inner shelf with outcropping basement rocks and the sedimentary basins of the middle to outer shelf. Distinct zones of anomaly patterns and lineaments can be associated with at least three tectonic phases from (1) magmatic emplacement zones of Cretaceous rifting and breakup (100-85. Ma), to (2) a southern distributed plate boundary zone of the Bellingshausen Plate (80-61. Ma) and (3) activities of the WARS indicated by NNE-SSW trending lineaments (55-30. Ma?). The analysis and interpretation are also used for constraining the directions of some of the flow paths of past grounded ice streams across the shelf. © 2012 Elsevier B.V.