The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

Keeling, Patrick J, Burki, Fabien, Wilcox, Heather M, Allam, Bassem, Allen, Eric E, Amaral-Zettler, Linda A, Armbrust, E Virginia, Archibald, John M, Bharti, Arvind K, Bell, Callum J, Beszteri, Bank, Bidle, Kay D, Cameron, Connor T, Campbell, Lisa, Caron, David A, Cattolico, Rose Ann, Collier, Jackie L, Coyne, Kathryn, Davy, Simon K, Deschamps, Phillipe, Dyhrman, Sonya T, Edvardsen, Bente, Gates, Ruth D, Gobler, Christopher J, Greenwood, Spencer J, Guida, Stephanie M, Jacobi, Jennifer L, Jakobsen, Kjetill S, James, Erick R, Jenkins, Bethany, John, Uwe, Johnson, Matthew D, Juhl, Andrew R, Kamp, Anja, Katz, Laura A, Kiene, Ronald, Kudryavtsev, Alexander, Leander, Brian S, Lin, Senjie, Lovejoy, Connie, Lynn, Denis, Marchetti, Adrian, McManus, George, Nedelcu, Aurora M, Menden-Deuer, Susanne, Miceli, Cristina, Mock, Thomas, Montresor, Marina, Moran, Mary Ann, Murray, Shauna, Nadathur, Govind, Nagai, Satoshi, Ngam, Peter B, Palenik, Brian, Pawlowski, Jan, Petroni, Giulio, Piganeau, Gwenael, Posewitz, Matthew C, Rengefors, Karin, Romano, Giovanna, Rumpho, Mary E, Rynearson, Tatiana, Schilling, Kelly B, Schroeder, Declan C, Simpson, Alastair GB, Slamovits, Claudio H, Smith, David R, Smith, G Jason, Smith, Sarah R, Sosik, Heidi M, Stief, Peter, Theriot, Edward, Twary, Scott N, Umale, Pooja E, Vaulot, Daniel, Wawrik, Boris, Wheeler, Glen L, Wilson, William H, Xu, Yan, Zingone, Adriana and Worden, Alexandra Z ;

Contact

Bank.Beszteri [ at ] awi.de

Abstract

Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.

Item Type

Article

Authors

Divisions

AWI Organizations > Biosciences > Polar Biological Oceanography
AWI Organizations > Biosciences > Ecological Chemistry

Primary Division

Organizations > AWI Organizations > Biosciences > Ecological Chemistry

Programs

Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 1: Changes and regional feedbacks in Arctic and Antarctic > WP 1.5: Southern Ocean physics, biodiversity, and biogeochemical fluxes in a changing climate
Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 2: Fragile coasts and shelf sea > WP 2.2: Species interactions in changing and exploited coastal seas
Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 2: Fragile coasts and shelf sea > WP 2.3: Evolution and adaptation to climate change and anthropogenic stress in coastal and shelf systems

Primary Topic

Helmholtz Programs > Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 1: Changes and regional feedbacks in Arctic and Antarctic > WP 1.5: Southern Ocean physics, biodiversity, and biogeochemical fluxes in a changing climate

Publication Status

Published

Eprint ID

35826

DOI https://www.doi.org/10.1371/journal.pbio.1001889

Cite as

Keeling, P. J. , Burki, F. , Wilcox, H. M. , Allam, B. , Allen, E. E. , Amaral-Zettler, L. A. , Armbrust, E. V. , Archibald, J. M. , Bharti, A. K. , Bell, C. J. , Beszteri, B. , Bidle, K. D. , Cameron, C. T. , Campbell, L. , Caron, D. A. , Cattolico, R. A. , Collier, J. L. , Coyne, K. , Davy, S. K. , Deschamps, P. , Dyhrman, S. T. , Edvardsen, B. , Gates, R. D. , Gobler, C. J. , Greenwood, S. J. , Guida, S. M. , Jacobi, J. L. , Jakobsen, K. S. , James, E. R. , Jenkins, B. , John, U. , Johnson, M. D. , Juhl, A. R. , Kamp, A. , Katz, L. A. , Kiene, R. , Kudryavtsev, A. , Leander, B. S. , Lin, S. , Lovejoy, C. , Lynn, D. , Marchetti, A. , McManus, G. , Nedelcu, A. M. , Menden-Deuer, S. , Miceli, C. , Mock, T. , Montresor, M. , Moran, M. A. , Murray, S. , Nadathur, G. , Nagai, S. , Ngam, P. B. , Palenik, B. , Pawlowski, J. , Petroni, G. , Piganeau, G. , Posewitz, M. C. , Rengefors, K. , Romano, G. , Rumpho, M. E. , Rynearson, T. , Schilling, K. B. , Schroeder, D. C. , Simpson, A. G. , Slamovits, C. H. , Smith, D. R. , Smith, G. J. , Smith, S. R. , Sosik, H. M. , Stief, P. , Theriot, E. , Twary, S. N. , Umale, P. E. , Vaulot, D. , Wawrik, B. , Wheeler, G. L. , Wilson, W. H. , Xu, Y. , Zingone, A. and Worden, A. Z. (2014): The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing , PLoS Biology, 12 (6), e1001889-e1001889 . doi: https://www.doi.org/10.1371/journal.pbio.1001889